Table 3 CTLA4 promoter minor allele frequency in Cocker spaniels with (cases) and without (controls) IMHA
Allele (SNP/INDEL) | Minor allele | Cases minor allele frequency | Controls minor allele frequency | P value |
|---|---|---|---|---|
SNP 1 (A > G) | A | 0.017 | 0.063 | 0.276 |
SNP 2 (A > G) | A | 0.017 | 0.063 | 0.276 |
SNP 3 (G > A) | A | 0.000 | 0.008 | 1.000 |
SNP 4 (A > G) | A | 0.017 | 0.063 | 0.276 |
SNP 5 (A > G) | A | 0.017 | 0.063 | 0.276 |
SNP 6 (A > C) | A | 0.017 | 0.063 | 0.276 |
SNP 7 (G > A) | G | 0.017 | 0.063 | 0.276 |
SNP 8 (G > A) | A | 0.000 | 0.000 | 1.000 |
SNP 9 (G > A) | A | 0.000 | 0.016 | 1.000 |
SNP 10 (G > A) | G | 0.017 | 0.063 | 0.276 |
SNP 11 (C > G) | G | 0.000 | 0.000 | 1.000 |
SNP 12 (T > C) | T | 0.017 | 0.063 | 0.276 |
SNP 13 (C > T) | T | 0.017 | 0.016 | 1.000 |
SNP 14 (C > A) | C | 0.017 | 0.063 | 0.276 |
SNP 15 (C > T) | C | 0.017 | 0.063 | 0.276 |
SNP 16 (G > T) | G | 0.017 | 0.063 | 0.276 |
SNP 17 (T > C) | C | 0.000 | 0.000 | 1.000 |
SNP 18 (T > G) | G | 0.000 | 0.000 | 1.000 |
SNP 19 (A > G) | A | 0.017 | 0.063 | 0.276 |
SNP 20 (C > T) | T | 0.000 | 0.000 | 1.000 |
INDEL 1 | + | 0.000 | 0.000 | 1.000 |
INDEL 2 | - | 0.017 | 0.063 | 0.276 |
INDEL 3 | + | 0.034 | 0.079 | 0.345 |