Table 4 Variations in Labrador and golden retrievers sequenced for the two LCN1 regions that had shown initial genomic variation. No variation was determined for SNPs that were fixed for a single allele within the population and have been denoted NA
SNP | CFA location | Alleles (frequency) | Genotypic P-values (n = 36) | Allele frequency P-values (n = 36) |
|---|---|---|---|---|
rs24546658 | 9:49713020 | C/G (0.933/0.067) | 0.0996 | 0.1071 |
rs9027939 | 9:49712904 | C/T (0.417/0.583) | 0.5272 | 0.4580 |
rs24546659 | 9:49712853 | C/G (0.933/0.067) | 0.0996 | 0.1071 |
rs24546660 | 9:49712772 | A/G (0.067/0.933) | 0.0996 | 0.1071 |
rs24546661 | 9:49712734 | A/G (0.583/0.417) | 0.2689 | 0.2580 |
rs24546662 | 9:49712702 | C/T (1/0) | NA | NA |
rs8828486 | 9:49707408 | A/C (0.581/0.419) | 0.3466 | 0.2740 |
rs8828487 | 9:49707388 | A/G (0.565/0.435) | 0.3504 | 0.3412 |
rs8828488 | 9:49707260 | A/G (0.536/0.464) | 0.4022 | 0.3189 |
rs24565404 | 9:49707194 | C/T (0.589/0.410) | 0.7844 | 0.7129 |
rs8828489 | 9:49707164 | C/T (0.482/0.528) | 0.5182 | 0.4514 |
rs8828490 | 9:49707115 | C/T (0.500/0.500) | 0.4127 | 0.3679 |
rs24565406 | 9:49707104 | A/G (0.089/0.911) | 0.0978 | 0.0970 |
rs24565408 | 9:49707103 | A/T (0.054/0.946) | 0.2222 | 0.2217 |
rs8828491 | 9:49707082 | C/T (0.446/0.554) | 0.5066 | 0.4113 |