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Table 2 5′ UTR microsatellite repeat length diversity, sequence and occurrence observed in dog (D), wolf (W), and coyote (C)

From: Single nucleotide polymorphisms and microsatellites in the canine glutathione S-transferase pi 1 (GSTP1) gene promoter

Repeat unit

Sequence

VAR score

dG (kcal/mol)

D

W

C

10

GCT(GCC)7ACCGCC

0.58

−5.6

0.007

0.000

0.286

11

GCT(GCC)8ACCGCC

0.75

−8.5

0.099

0.000

0.000

12*1

GCT(GCC)9ACCGCC

0.88

−9.5

0.000

0.040

0.000

12*2

GCT(GCC)3GCTGCCACTGCTACCGCCACCGCC

0.72

−4.8

0.000

0.000

0.286

13

GCT(GCC)10ACCGCC

0.97

−11.5

0.000

0.180

0.000

14

GCT(GCC)13

1.09

−14.5

0.013

0.000

0.000

15

GCT(GCC)14

1.12

−17.5

0.005

0.000

0.000

16*1

GCT(GCC)15

1.13

−17.5

0.302

0.140

0.000

16*2

GCT(GCC)3GCTGCCACTGCTACC(GCC)3ACCGCCACCGCC

0.58

−7.3

0.124

0.000

0.143

17

GCT(GCC)5GCT(GCC)8ACCGCC

1.10

−14.4

0.424

0.214

0.143

18

GCT(GCC)5GCT(GCC)9ACCGCC

1.10

−18.0

0.009

0.285

0.000

19

GCT(GCC)5GCT(GCC)6ACCGCCACCGCCACCGCC

1.07

−14.4

0.013

0.000

0.000

20

GCT(GCC)3GCTGCCACTGCTACC(GCC)3ACC(GCC)3ACCGCCACCGCC

–

−11.4

0.000

0.140

0.143

22*1

GCT(GCC)3GCTGCAACTGCTACC(GCC)3ACTGCTACC(GCC)3ACCGCCACCGCC

0.64

−11.0

0.002

0.000

0.000

22*2

GCT(GCC)3GCTGCAACTGCTACC(GCC)2ACTGCTACC(GCC)4ACCGCCACCGCC

–

−13.3

0.002

0.000

0.000

  1. Sequences shown are 5′ → 3′ on the (−) strand. The SERV VARScore refers to the consensus GCC sequence. Computed Gibbs’ energy contributions (dG) shown are for the most stable RNA secondary structure motif only