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Table 3 Moderate impact exonic single nucleotide variants identified by Ensembl’s Variant Effect Predictor (VEP)

From: Lumbosacral stenosis in Labrador retriever military working dogs – an exomic exploratory study

Location Variant allele Symbol Gene Exon Amino acid Codons Strand
1:117,510,670 T SCN1B ENSCAFG00000007129 1/5 A/T Gca/Aca -1
1:119,322,126 T RGS9BP ENSCAFG00000007509 1/1 R/H cGc/cAc -1
7:56,104,802 T ASXL3 ENSCAFG00000017980 10/11 T/N aCt/aAt -1
7:56,104,802 T ASXL3 ENSCAFG00000017980 4/5 T/N aCt/aAt -1
7:57,946,958 C TTR ENSCAFG00000018046 1/4 S/G Agc/Ggc -1
8:4,065,167 A LRRC16B ENSCAFG00000011712 16/40 A/T Gcc/Acc 1
14:26,883,912 A ENSCAFG00000009915 4/8 A/T Gcc/Acc 1
14:36,176,692 C ENSCAFG00000009635 4/6 W/R Tgg/Cgg 1
14:36,176,713 C ENSCAFG00000009635 5/6 C/R Tgt/Cgt 1
27:31,190,558 C PTPRO ENSCAFG00000012789 2/27 N/S aAc/aGc -1
34:32,184,727 C ZBBX ENSCAFG00000014517 18/20 K/R aAa/aGa -1
34:32,184,727 C ZBBX ENSCAFG00000014517 16/17 K/R aAa/aGa -1
X:19,788,059 A ENSCAFG00000013408 6/7 T/N aCc/aAc 1
X:19,789,132 T ENSCAFG00000013408 7/7 T/S Acc/Tcc 1
X:19,789,321 A ENSCAFG00000013408 7/7 A/T Gcc/Acc 1
X:19,789,651 G ENSCAFG00000013408 7/7 L/V Ctt/Gtt 1
X:19,789,906 T ENSCAFG00000013408 7/7 L/F Ctc/Ttc 1
  1. List of moderate impact variants identified by VEP in the canine exome. Also listed are the position (chromosome number and loci), variant allele, gene name and annotation, and the amino acid change of the exonic variant. Variants without gene symbol represent canine genes that have not been characterized yet