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Table 3 Moderate impact exonic single nucleotide variants identified by Ensembl’s Variant Effect Predictor (VEP)

From: Lumbosacral stenosis in Labrador retriever military working dogs – an exomic exploratory study

Location

Variant allele

Symbol

Gene

Exon

Amino acid

Codons

Strand

1:117,510,670

T

SCN1B

ENSCAFG00000007129

1/5

A/T

Gca/Aca

-1

1:119,322,126

T

RGS9BP

ENSCAFG00000007509

1/1

R/H

cGc/cAc

-1

7:56,104,802

T

ASXL3

ENSCAFG00000017980

10/11

T/N

aCt/aAt

-1

7:56,104,802

T

ASXL3

ENSCAFG00000017980

4/5

T/N

aCt/aAt

-1

7:57,946,958

C

TTR

ENSCAFG00000018046

1/4

S/G

Agc/Ggc

-1

8:4,065,167

A

LRRC16B

ENSCAFG00000011712

16/40

A/T

Gcc/Acc

1

14:26,883,912

A

ENSCAFG00000009915

4/8

A/T

Gcc/Acc

1

14:36,176,692

C

ENSCAFG00000009635

4/6

W/R

Tgg/Cgg

1

14:36,176,713

C

ENSCAFG00000009635

5/6

C/R

Tgt/Cgt

1

27:31,190,558

C

PTPRO

ENSCAFG00000012789

2/27

N/S

aAc/aGc

-1

34:32,184,727

C

ZBBX

ENSCAFG00000014517

18/20

K/R

aAa/aGa

-1

34:32,184,727

C

ZBBX

ENSCAFG00000014517

16/17

K/R

aAa/aGa

-1

X:19,788,059

A

ENSCAFG00000013408

6/7

T/N

aCc/aAc

1

X:19,789,132

T

ENSCAFG00000013408

7/7

T/S

Acc/Tcc

1

X:19,789,321

A

ENSCAFG00000013408

7/7

A/T

Gcc/Acc

1

X:19,789,651

G

ENSCAFG00000013408

7/7

L/V

Ctt/Gtt

1

X:19,789,906

T

ENSCAFG00000013408

7/7

L/F

Ctc/Ttc

1

  1. List of moderate impact variants identified by VEP in the canine exome. Also listed are the position (chromosome number and loci), variant allele, gene name and annotation, and the amino acid change of the exonic variant. Variants without gene symbol represent canine genes that have not been characterized yet