Reference | Dog breed | Number of genotyped animals | Number of animals in pedigree | Mean pedigree-based inbreeding coefficient FPED | Pedigree-based effective population size (Ne) | Genomic-based Ne | Mean genomic-based inbreeding coefficient FROH (ROH length) | 50% decay value of r2 | Pearson correlation coefficient of FPED and FROH |
---|---|---|---|---|---|---|---|---|---|
Wiener et al. 2017 [3] | Labrador Retriever | 1008 | 25,526 | 0.0702 | 55–82 | 74–88 | 0.21 (100 SNPs) | 0.78 | |
Stern et al. 2013 [4] | Golden Retriever | 24 | 715 kb (r2 = 0.243) | ||||||
Rottweiler | 28 | 834 kb (r2 = 0.241) | |||||||
Newfoundland | 23 | 344 kb (r22 = 0.243) | |||||||
Pfahler et al. 2015 [5] | Lundehund | 28 | 0.1 | 12 | 0.87 (50 SNPs) 0.87 (65 SNPs) 0.81 (358 SNPs) | 0.11 (FROH_358SNP) | |||
Alam et al. 2012 [6] | Sapsaree | 183 | 8264 | 0.1 | 16–51 | 64–75 (5 generations ago) | |||
Mäki 2010 [7] | Nova Scotia Duck Tolling Retriever | 28,668 | 0.26 | 18 (realised Ne) | |||||
Lancashire Heeler dog | 4782 | 0.1 | 28 (realised Ne) | ||||||
Leroy et al. 2009 [2] | Dalmatian (among 60 other) | 20 | 17,778 | 0.024 | 120 (realised Ne) |