Whole genome sequencing for the investigation of canine mammary tumor inheritance - an initial assessment of high-risk breast cancer genes reveal BRCA2 and STK11 variants potentially associated with risk in purebred dogs

Table 2 Whole genome coverage summary

Sample	Number of Mapped Reads to canFam3.1	% of Reads Mapped to canFam3.1	Average Sequencing Depth	% of bases covered greater than or equal to:
Sample	Number of Mapped Reads to canFam3.1	% of Reads Mapped to canFam3.1	Average Sequencing Depth	1X	5X	10X	15X	20X	25X	50X	75X	100X
Dal 1	432,798,423	99.0	29.0	99.7	99.3	98.9	97.8	92.3	73.6	1.2	0.5	0.3
Dal 2	479,265,395	99.1	24.6	99.7	99.3	98.7	95.3	79.0	45.9	0.8	0.4	0.2
Dal 3	517,919,216	99.1	27.4	99.7	99.3	98.8	97.3	89.1	64.7	1.0	0.4	0.3
Golden R 1	514,850,463	99.2	29.0	99.7	99.3	98.9	97.8	92.4	73.3	1.2	0.5	0.3
Golden R 2	521,394,202	99.3	29.2	99.7	99.3	98.9	97.8	92.7	74.5	1.2	0.5	0.3
Golden R 3	469,958,383	99.1	26.9	99.7	99.3	98.1	94.5	85.4	62.1	1.0	0.4	0.3
Golden R 4	420,815,898	99.0	23.4	99.6	99.1	97.2	91.0	72.4	39.3	0.7	0.3	0.2
Golden R 5	435,936,648	99.2	24.3	99.7	99.3	98.5	94.6	77.1	43.9	0.8	0.4	0.2
Sib H 1	439,440,441	99.2	25.1	99.7	99.2	98.6	95.7	81.3	49.3	0.9	0.4	0.2
Sib H 2	676,505,498	99.2	35.1	99.7	99.3	99.0	98.5	97.3	92.3	2.9	0.7	0.4
Sib H 3	306,005,622	99.2	16.0	99.6	98.9	91.7	57.2	18.0	3.6	0.4	0.2	0.1
Stand Sch 1	233,378,490	99.3	12.1	99.6	97.3	71.0	23.6	3.9	1.0	0.2	0.1	0.1
Stand Sch 2	716,837,887	98.7	36.6	99.7	99.5	99.2	98.7	97.6	93.5	4.2	0.8	0.5
Stand Sch 3	444,186,080	99.1	25.0	99.7	99.3	98.6	95.3	80.2	48.3	0.9	0.4	0.2
Average	472,092,332	99.1	26.0	99.7	99.1	96.1	88.2	75.6	54.7	1.2	0.4	0.3

ISSN: 2662-9380