From: Genome-wide association analysis of idiopathic epilepsy in the Belgian shepherd
CFA 14 Haplotype Blocka | Haplotype | Controls (2n = 88) | Cases (2n = 38) | OR (95% CI) | p value |
BICF2S23230472 BICF2P437468 BICF2S23211419 BICF2S23539344 | CTCT | 67 | 14 | 0.18 (0.08–0.42) | 0.00004 |
vs. CTCG, ACTG | 21 | 24 | |||
CTCG | 14 | 9 | 1.64 (0.64–4.20) | 0.321651 | |
vs. CTCT, ACTG | 74 | 29 | |||
ACTG* | 7 | 15 | 7.55 (2.75–20.71) | 0.000054 | |
vs. CTCT, CTCG | 81 | 23 | |||
CFA 37 Haplotype Block | Haplotype | Controls (2n = 90) | Cases (2n = 40) | OR (95% CI) | p value |
BICF2P1290526 BICF2P1131874 BICF2P890779 BICF2P434501 TIGRP2P419329_rs9085363 BICF2P426309 | TAGCTC | 43 | 4 | 0.12 (0.04–0.37) | 0.000057 |
vs. TGACTC, CGATTC, CGATGT | 47 | 36 | |||
TGACTC | 24 | 16 | 1.83 (0.84–4.03) | 0.151538 | |
vs TAGCTC, CGATTC, CGATGT | 66 | 24 | |||
CGATTC* | 10 | 13 | 3.85 (1.52–9.79) | 0.00548 | |
vs. TAGCTC, TGACTC, CGATGT | 80 | 27 | |||
CGATGT | 13 | 7 | 1.26 (0.46–3.43) | 0.7927 | |
vs. TAGCTC, TGACTC, CGATTC | 77 | 33 |