Table 2 Minor allele frequencies. SNPs and indels are shown in 5’ to 3’ order from top to bottom
From: Polymorphisms in the CTLA4 promoter sequence are associated with canine hypoadrenocorticism
Marker | WHWT | Springer Spaniel | Cocker Spaniel | |||
|---|---|---|---|---|---|---|
Minor Allele | MAF | Minor Allele | MAF | Minor Allele | MAF | |
SNP1 | A | 0.102 | A | 0.38 | A | 0.086 |
SNP2 | A | 0.102 | A | 0.38 | A | 0.086 |
SNP3 | A | 0 | A | 0.0059 | A | 0.0071 |
SNP4 | A | 0.102 | A | 0.38 | A | 0.086 |
SNP5 | A | 0.102 | A | 0.38 | A | 0.086 |
SNP6 | A | 0.102 | A | 0.38 | A | 0.086 |
SNP7 | G | 0.102 | G | 0.39 | G | 0.086 |
SNP8 | A | 0 | A | 0.012 | A | 0 |
SNP9 | A | 0.102 | A | 0.36 | A | 0.014 |
SNP10 | G | 0.102 | G | 0.38 | G | 0.086 |
SNP11 | G | 0 | G | 0 | G | 0 |
SNP12 | T | 0.102 | T | 0.38 | T | 0.086 |
SNP13 | T | 0.034 | T | 0.14 | T | 0.036 |
SNP14 | A | 0.49 | C | 0.4 | C | 0.093 |
SNP15 | C | 0.102 | C | 0.38 | C | 0.086 |
SNP16 | G | 0.102 | G | 0.38 | G | 0.086 |
SNP17 | C | 0 | C | 0 | C | 0 |
SNP18 | G | 0.407 | G | 0.0059 | G | 0 |
SNP19 | A | 0.102 | A | 0.38 | A | 0.086 |
SNP20 | T | 0 | T | 0 | T | 0 |
indel1 | – | 0 | – | 0 | – | 0 |
indel2 | – | 0.102 | – | 0.38 | – | 0.086 |
indel3 | + | 0.14 | – | 0.49 | + | 0.12 |