Table 6 Association of CTLA4 polymorphisms with hypoadrenocorticism in springer spaniels. Markers are as Table 3, 5′ to 3′ order from top to bottom SNPs and then indels. MAF: minor allele frequency; NaN: not a number; N/A: not calculable; OR: odds ratio; 95% CI: 95% confidence intervals of the OR; Max (T) p value calculated by permutation analysis; FDR: false discovery rate

SNP1

A

2.16 (1.12–4.17)

SNP2

A

2.16 (1.12–4.17)

SNP3

A

0 (0 - NaN)

SNP4

A

2.16 (1.12–4.17)

SNP5

A

2.16 (1.12–4.17)

SNP6

A

2.16 (1.12–4.17)

SNP7

G

2.5 (1.29–4.82)

SNP8

A

N/A

SNP9

A

2.19 (1.13–4.23)

SNP10

G

2.16 (1.12–4.17)

SNP11

N/A

N/A

SNP12

T

2.16 (1.12–4.17)

SNP13

T

0.87 (0.33–2.26)

SNP14

C

1.85 (0.96–3.54)

SNP15

C

2.16 (1.12–4.17)

SNP16

G

2.16 (1.12–4.17)

SNP17

N/A

N/A

SNP18

G

0 (0 - NaN)

SNP19

A

2.16 (1.12–4.17)

SNP20

N/A

N/A

indel1

N/A

N/A

indel2

–

2.16 (1.12–4.17)

indel3

–

0.50 (0.26–0.96)