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Table 2 Allelic associations

From: Searching for "monogenic diabetes" in dogs using a candidate gene approach

      Minor/associated allele Frequency Major allele p-values Odds ratio  
  Gene CFA Position (bp) Annotation   Case Control   Raw Bonferroni Permutation   95% CI
Bichon Frise              
rs23901704 ZFP57 35 26,267,827 Syn. coding T 0.00 0.24 C 2.58E-04 7.21E-03 4.30E-03 nc nc
Cocker Spaniel              
rs24305581 MTTL1 5 82,755,249 Intronic A 0.44 0.23 G 3.73E-04 1.05E-02 1.13E-02 2.67 1.54-4.61
rs22302353 PAX4 14 8,718,207 Intronic A 0.09 0.33 G 6.45E-06 1.81E-04 3.00E-04 0.21 0.10-0.43
rs22686871 INS 18 46,324,586 Syn. coding G 0.00 0.13 T 7.22E-05 2.02E-03 1.90E-03 nc nc
Miniature Dachshund              
rs8804236 HNF4A 24 31,897,491 Syn. coding G 0.14 0.36 A 1.45E-03 4.62E-02 4.31E-02 0.28 0.12-0.63
Samoyed              
rs23892119 ZFP57 35 26,270,002 Intronic C 0.11 0.00 T 1.55E-04 5.10E-03 5.50E-03 nc nc
  1. CFA = canine chromosome number: Permutations: n=10,000: CI = confidence interval: Syn. Coding = synonymous coding SNP; nc = not calculable as one of the populations does not carry one of the alleles. Allele associations are calculated using the minor allele as a reference.