Table 5 Overview of the amount and length of runs of homozygosity (ROHs). Seven different length thresholds were set for the calling of runs of homozygosity (ROH). For all thresholds the number and length of detected ROHs per individual and detected consensus ROHS are given, respectively. The mean inbreeding coefficient FROH was estimated depending on the different thresholds
Thresholds | All ROHs per individual | Consensus ROHs per individual | ||||||
|---|---|---|---|---|---|---|---|---|
Minimum ROH length in SNP | Mean number of ROHs | Length of shortest ROH (Kb) | Mean length of ROH (Mb) | Average cumulative length of all ROHs (Mb) | Number of consensus ROHs | Mean length of consensus ROH (Mb) | Cumulative length of all consensus ROHs (Mb) | Mean FROH |
10 | 1185 | 120 | 0.52 | 619.25 | 13 | 0.23 | 2.93 | 0.28 |
20 | 384 | 240 | 1.26 | 486.40 | 5 | 0.4 | 1.99 | 0.22 |
30 | 207 | 360 | 2.07 | 428.53 | 4 | 0.4 | 1.6 | 0.19 |
40 | 157 | 480 | 2.59 | 407.02 | 1 | 0.67 | 0.67 | 0.18 |
50 | 115 | 700 | 3.29 | 379.12 | 0 | 0 | 0 | 0.17 |
65 | 94 | 910 | 3.82 | 359.88 | 0 | 0 | 0 | 0.16 |
358 | 18 | 5012 | 10.22 | 183.97 | 0 | 0 | 0 | 0.08 |